Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LVIMVYESGVSEMTENEQNKHEEKALVPSFGLDLLRDYLIPELLGD-----EAPHIMYWAGKDLARKFPLDSL------------EEVA-----EFFEEASWGNF-SILK---EKKDEMRLLLEGETVAARFRT----QEEPTFKLEAGFIAEQLQSQKKLYTESYDEIDKRKKQVTIIVKWDRKETIDNEERY
2J3W Chain:B ((22-177))
------------------------TEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKAL-FGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILT-HSGFPAKVTVHWHK---GTTLMIKFDES---------
General information:
TITO was launched using:
RESULT:
Template:
2J3W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10520 for 879 contacts (-12.0/contact) +
2D Compatibility (PS) -13555 + (NN) -5041 + (LL) 2820
1D Compatibility (HY) -6400 + (ID) 700
Total energy: -33396.0 ( -37.99 by residue)
QMean score : 0.221
(partial model without unconserved sides chains):
PDB file :
Tito_2J3W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J3W-query.scw
PDB file :
Tito_Scwrl_2J3W.pdb
: