Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTTSPFSLKSRSLKFKWTFGASAAIFLTFFLFSYAIYQGIGQMLLNEEEPEVKELLLATTSTLTNQDLTDNEEIKYLFNNDKTVNRKLQDQVINLYDKDGHFINKYYFSRSQDITSIDFSQYFVSGTDKFIMNKPTIDGQKMMTAQMPIVADDNTTVIGYAQVVNPLTSYNRMMDRLLVTMILLGAVALFISGMLGYLLAQNFLNPLTRLARTMNDIRKNGFQKRIETKTNSRDEIGELTVVFNDMMTRIETSFEQQKQFVEDASHELRTPVQIMEGHLKLLTRW----GKDDPAVLDESLNASLTELERMKKLVQEMLDLSRAEQISQTKELQITDV--NATVEQVRRNFEVMYENFTFTLKEDDTDLRALIQHNHLEQILIIIMDNAVKYSGDGTEVDMHVYKEQKQIHIDVRDYGEGISQEEIDKIFNRFYRVDKARSREKGGNGLGLAIAKQLVEGYLGTINAVSEPDKGTTIKITLPYIEPKSK |
4Q20 Chain:A ((40-254)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KRDFVGNVSYELRTPLTTIIGYSELLERADSERGRNHVA----AVRAAATQLARSIDDVLDMAQIDAGEMALEIEDIRVSDLLLNAQ-ERALKDAQLGGVTLAVECEEDVGLIRG--DGKRLAQTLDHLVENALRQTPPGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAHIFDRFV------GRDRGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHLP------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q20.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -68696 for 1569 contacts (-43.8/contact) +
2D Compatibility (PS) -22185 + (NN) -8641 + (LL) 20668
1D Compatibility (HY) -8400 + (ID) 3200
Total energy: -90454.0 ( -57.65 by residue)
QMean score : 0.400
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