Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKKKNIILISVLLGALLLLTGCSMDPSQNTDGFFSTYLIQPFTSFIMFVAKFVGGNYGIAIIITTLLIRALIMPLNLRTAKAQMGMQSKMAVAKPEIDEIQARLKRATSK--EEQATIQKEMMAVYSKYNINPMQMGCLPLLIQMPILMAFYYAIRGSSEIASHTFLWFNLGSPDMVLAIIAGLVYLAQYFVSMIGYSPEQKKQMKIIGLMSPIMILFVSFTAPSALALYWAVGGLFLAGQTLLTKKLYMNKHPEIKVMEQEEKEFEQIVEEQKKEK
3WO6 Chain:A ((1-232))
---------------------GQDPITSESEGIWNHFFVYPMSWLITTVANLLNGSYGLSIIIVTILIRLALLPLTLKQQKSMR----AMQVIRPEMEAIQKKYKEKASKDPKVQQEMQKELLGLYQKHGVNPM-AGCLPLFIQLPILMAFYFAIMRTEEIRYHTFLWFDLGQPDYILPFVAGITTYFQFKMTMS-----HQMQMKVMLYVMPVMIIIAGLSLPSALSLYWVIGNIFMIIQTY----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3WO6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159799 for 1408 contacts (-113.5/contact) +
2D Compatibility (PS) -22649 + (NN) -9353 + (LL) 5720
1D Compatibility (HY) -28400 + (ID) 4350
Total energy: -218831.0 ( -155.42 by residue)
QMean score : 0.385
(partial model without unconserved sides chains):
PDB file :
Tito_3WO6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WO6-query.scw
PDB file :
Tito_Scwrl_3WO6.pdb
: