Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNKRLIILLECAIFAAVAMVLSFIPLDIGSSFSISLGMIPMYVIAIRRGFWAAGFAGLLWGLLHFLTGKAYILMPSQAIIEYILAFSFIAFSGVFSKQVRSNLAANQLKKAIEWAWGTMIIGGLARYFWHYVAGVLFWGAYAFQGWGAQLFSIVMNGASCLGTVLVSGIIISILLKTSPKLFLPK
3RLB Chain:A ((17-189))
----NVRLLTEIAFMAALAFIISLIPNTVYGWIIVEIACIPILLLSLRRGLTAGLVGGLIWGILSMITGHAYILSLSQAFLEYLVAPVSLGIAGLFRQKTAPL--------KLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISGILTAIAAFVILIIFVKKFPKLFIH-
General information:
TITO was launched using:
RESULT:
Template:
3RLB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -186523 for 1408 contacts (-132.5/contact) +
2D Compatibility (PS) -17756 + (NN) -2930 + (LL) 1184
1D Compatibility (HY) -24000 + (ID) 3000
Total energy: -233025.0 ( -165.50 by residue)
QMean score : 0.373
(partial model without unconserved sides chains):
PDB file :
Tito_3RLB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RLB-query.scw
PDB file :
Tito_Scwrl_3RLB.pdb
: