Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKNTKGKKITIIISIIILILVIATFSGYYYVKSQLEPKDEASKEKITVEIPAGSSISDISTILEDKKVINNASIFSFYVKYNNDTNLKAGNYELSPA-MNTDQI-VKKMQEGKTVAPAKLVIPEG-YTLDQIADRIVAYQPKLKKADVLKTMDDPEFVASMIKAYPETVTNDVLNKSIKHPLEGYLYPATY-TFKGTDVSAEQIITEMVKA-TDVNIAKYRDELTKQKMSVHKFLTM-SSIIEKEATENVDRKMIASVFYNRLAKD-MRLQTDPTVLYA-LGEHKSKTTYKDLEVDSPYNTYKNNGLPPGPISNSGDSSMEAALYPEKSDYLYFLANTKTGKVYFSKTLEEHNKLKEEHITKNN----- |
2R1F Chain:A ((11-270)) | -------------------------------------------------------------------------------------HFKAGTYRFTPQMTV--REMLKLLESGKEA-QFPLRLVEGMRLSDYLKQLREAPYIK----HTLSDDKYATVAQAL-------------ELENPEWIEGWFWPDTWMYTANT--TDVALLKRAHKKMVKAVDSAWEGRADGLPYKDKNQLVTMASIIEKETAVASERDQVASVFINRLRIGMR-LQTDPTVIYGMGERYNGKLSRADLETPTAYNTYTITGLPPGAIATPGADSLKAAAHPAKTPYLYFVAD-GKGGHTFNTNLASHNKSVQDYLKVLKEKNAQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2R1F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 6868 for 1781 contacts (3.9/contact) +
2D Compatibility (PS) -26640 + (NN) -11078 + (LL) 8256
1D Compatibility (HY) -5200 + (ID) 3750
Total energy: -31544.0 ( -17.71 by residue)
QMean score : 0.383
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