Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLIPLSLIIFLGFLAVLCLFDFVFRLYWFKYFLATMGLIASGVVFFISFYGGGMSQTEIAIAIFIGSFGEYVVSLIISLVRFISRKSKKPKQKKKAKTA
3S39 Chain:A ((187-220))
-------------------LVTYMAVVFWLMWFLASLGLVLEAVLFLLPWSFG-----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3S39.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12941 for 139 contacts (-93.1/contact) +
2D Compatibility (PS) -3473 + (NN) -95 + (LL) 6232
1D Compatibility (HY) -7200 + (ID) 500
Total energy: -17977.0 ( -129.33 by residue)
QMean score : -0.268
(partial model without unconserved sides chains):
PDB file :
Tito_3S39.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S39-query.scw
PDB file :
Tito_Scwrl_3S39.pdb
: