Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVKIRLKRIGSKKKPFYRIVVADSRFPRDGRSIETIGTYNPL-LDPVEVKIDEEATLKWMHNGAKPSDTVRNLLSREGIMEKFHNQKLGK
1N33 Chain:P ((2-82))
--VKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVFRQ--------
General information:
TITO was launched using:
RESULT:
Template:
1N33.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26162 for 559 contacts (-46.8/contact) +
2D Compatibility (PS) -8355 + (NN) -3237 + (LL) 700
1D Compatibility (HY) -4800 + (ID) 2000
Total energy: -43854.0 ( -78.45 by residue)
QMean score : 0.414
(partial model without unconserved sides chains):
PDB file :
Tito_1N33.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N33-query.scw
PDB file :
Tito_Scwrl_1N33.pdb
: