Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEVFVDGASAGNPGPSGAGIVLKADGIYEQFAIPLAVMTNHEAEFIAIKLGLEEALKKQATLIRLYSDSKVAIEAI-------HKRHAKNPLFKP--HLDAILEMADSLELFFAEWRNVS------QNKQADQLARQAIKKQKQPGVK
1RBV Chain:A ((5-140))
VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVAL-EALKEHCEVI-LSTDSQYVRQGITQWIHNWKKRGWKTADAKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAA----------
General information:
TITO was launched using:
RESULT:
Template:
1RBV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49862 for 916 contacts (-54.4/contact) +
2D Compatibility (PS) -13354 + (NN) -7855 + (LL) 784
1D Compatibility (HY) -3200 + (ID) 2150
Total energy: -75637.0 ( -82.57 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_1RBV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RBV-query.scw
PDB file :
Tito_Scwrl_1RBV.pdb
: