Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKICIAIDGPAAAGKSTVAKIVAKKLRFVYIDTGAMYRAVTYIALKNNIAYEDEKAIAALLQKTVIR-FEPGEVQQVFVGSENVTEVIRSIEVTNHVSIVAAHPSIREALQERQQVFATEGGIVMDGRDIGTAVLPNAELKIFLLASVEERAERRYKENMAKGFTGDLDQLKKEIEERDHLDYTRTHSPLKKADDAIEVDTTSMSIDQVANKILSLAELKINN
3AKE Chain:A ((5-204))
------VTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGEDLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVPPP--FVAEGRDMGTAVFPEAAHKFYLTASPEVRAWRRARERPQA-----YEEVLRDLLRRDERD--QS----APAPDALVLDTGGMTLDEVVAWVLA--------
General information:
TITO was launched using:
RESULT:
Template:
3AKE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108612 for 1599 contacts (-67.9/contact) +
2D Compatibility (PS) -21149 + (NN) -8401 + (LL) 972
1D Compatibility (HY) -12400 + (ID) 3550
Total energy: -153140.0 ( -95.77 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_3AKE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AKE-query.scw
PDB file :
Tito_Scwrl_3AKE.pdb
: