Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VNILHIEWKTRIKSLVVWAVVVIVILGVFMAFFPSMQSSGMQDLVNTKMNALPQDMMKILHMDSMADLTNI--DAYFAYVFQYIFIAACVYAALIGAQALIKEETDGTIEFLYAQPITRSSLVFWKMIGNLLSFVAFWVITFLASVALVLFLKPSGVDGGNLVMELVRVFSSELLVAAVFMSAGFMVSSVLRSAKQASPVALALVFLTYILGIMA-GLNDKVDFFKYFSPINYAIPSEIMDKGITGTNALISCGVIVVMVAMTFVLYKKKDLKV
4O6Y Chain:A ((10-219))
----PIFMVVRVLGFIIAALVLTWTVHYRGGL--ALSSDNKDHIFNVHPVMMVIGLI-LFNGEAMLAYKSVQGTKNLKKLVHLTLQLTAFILSLIGVWAALKFHIDKGIENFYS-------------LHSWLGLACLFLFAFQWAAGFVTYWYPGG-------------------------------SRNSRASLMPWHVFLGISIYALALVTATTGILEKVTFLQVNQVITRY-STEAMLVNTMGVLILILGGFVILGVVT------------
General information:
TITO was launched using:
RESULT:
Template:
4O6Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147979 for 1532 contacts (-96.6/contact) +
2D Compatibility (PS) -21493 + (NN) -6205 + (LL) 6204
1D Compatibility (HY) -15600 + (ID) 1900
Total energy: -186973.0 ( -122.05 by residue)
QMean score : 0.174
(partial model without unconserved sides chains):
PDB file :
Tito_4O6Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4O6Y-query.scw
PDB file :
Tito_Scwrl_4O6Y.pdb
: