Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLVLIRHGQSEWNKLNLFTGWHDVDLSQEGVVEAMTAGKRIKEAGLEFDVAFTSVLTRAIKTLNYVLEESDQMWVPVHKSWRLNERHYGALQGLNKQETAEKYGADQVQKWRRSYDTLPPLLEENDERQAKNDRRYQLLDTHAIPSGENLKVTLERVIPYWMDTIAPEIKEGRRVVIAAHGNSLRALVKFLEGISDDEIMDLEIPTGVPLVYELNADLKPVN-KYYLDK
1QHF Chain:A ((2-229))
-KLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAIQTANIALEKADRLWIPVNRSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRLLPYWQDVIAKDLLSGKTVMIAAHGNSLRGLVKHLEGISDADIAKLNIPTGIPLVFELDENLKPSKPSYYLD-
General information:
TITO was launched using:
RESULT:
Template:
1QHF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79983 for 1892 contacts (-42.3/contact) +
2D Compatibility (PS) -24650 + (NN) -8550 + (LL) 272
1D Compatibility (HY) -19600 + (ID) 6100
Total energy: -138611.0 ( -73.26 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_1QHF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QHF-query.scw
PDB file :
Tito_Scwrl_1QHF.pdb
: