Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFQLKANGTDVKTEVISGFTTFLTMVYIVVVNP--AILSAAGVPFNTVFMATIISAVIGTLWMAIFANYPIAIAPGLGMNAYFVTVVTTQKLDYSVAFAAVFV--AGIIFLLLSLTPLREKIIEAIPHNLKAGITAGIGLFIAFLGFRMTGIIVSNDSNLVGLGDLHSKEAILAIVGLLITLILLALNVKGALFIGMIATGIIAFITGELKFTDGIVKLPPMPE------FVFTNPIHAFGDVMSYGLYAVVLSFLLITIFDTTGTMIGVAKKAGLMKGESLPNAKQALMADAVATSVGSMFGTTPTSAYIESSAGVATG-GRTGLTTLTVAILFMVSAFFAPLVGAVSGISAITAPALIVVGSMMIGAVKEIDWDTLDEAFPAFLVILAMPLTSSIAIGLAFGFISYPVLKVFTGKWRELNWFLIVIAVLFFILVAFLPH |
| 3N28 Chain:A ((3-325)) | LDALTTLPIKKHTALLNRFPETRFVTQLAKKRASWIVFGHYLTPAQFEDMDFFTNRFNAILDMWKVGRYEVALMDG-ELTSEHETILKALELDYARIQDVPDLTKPGLIVLDMDSTAIQIECIDEIAKLA------GVGEEVAEVTERAMQ------------GELDFEQSLRLRVSKL----------KDA------PEQILSQVRETLPLMPELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLSLDYAQSNTLEIVSGKLT--------GQVLGEVVSAQTKADILLTLAQQYD-----------VEIHNTVAVGDGANDLVMMAAA----------GLGVAYHAKPKVEAKAQTAVRFA---------------GLGGVVCILSAALVAQQKLSWK--------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3N28.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -333421 for 2575 contacts (-129.5/contact) +
2D Compatibility (PS) -31860 + (NN) 6076 + (LL) 11464
1D Compatibility (HY) -8400 + (ID) 2900
Total energy: -359041.0 ( -139.43 by residue)
QMean score : 0.178
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