Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYPQLSKEVAPNEIEAEMITNRGTIRIKLFPEIAPKTVENFVTHSKNGYYDGLIFHRVIPEFMIQGGDPDGRGTGGESIWGESFEDEFSTE-AFNLRGALSMANAG----PNTNGSQFFIVQKPDMPADMLGQMEQAGFPVEVIEAYKQGGTPWLDGRHTVFGHVIEGMDVVDEIANLPTGMQDKPVNDVVIEKINIK
2QER Chain:A ((19-173))
----------------VRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKGGESIYGRYFDDEIYPELKYDRRGILSMAS--ASKKPNTNGSQFFITYS---------------------------SLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDIVI-
General information:
TITO was launched using:
RESULT:
Template:
2QER.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48023 for 1156 contacts (-41.5/contact) +
2D Compatibility (PS) -15644 + (NN) -7019 + (LL) 2904
1D Compatibility (HY) -13600 + (ID) 3350
Total energy: -84732.0 ( -73.30 by residue)
QMean score : 0.647
(partial model without unconserved sides chains):
PDB file :
Tito_2QER.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QER-query.scw
PDB file :
Tito_Scwrl_2QER.pdb
: