Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSRKLDQLYRQVIMDHYKNPRNNGELPDSDVTIDLNNPTCGDQIHLHLKMDGDKIVAAKFTGSGCSISMASASMMTQSIIGKTEKEALKMSREFSEM-VQGHDHETIDEYGDVEALAGVAKFPARIKCATLSWKAMERAIFEKEGTK
2QQ4 Chain:E ((4-137))
-----LDELYREILLDHYQSPRNFGVLPQATKQAGGMNPSCGDQVEVMVLLEGDTIADIRFQGQGCAISTASASLMTEAVKGKKVAEALELSRKFQAMVVEGAPPDPT--LGDLLALQGVAKLPARVKCATLAWHALEEAL-------
General information:
TITO was launched using:
RESULT:
Template:
2QQ4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61017 for 1098 contacts (-55.6/contact) +
2D Compatibility (PS) -14428 + (NN) -10093 + (LL) 772
1D Compatibility (HY) -11600 + (ID) 3300
Total energy: -99666.0 ( -90.77 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_2QQ4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QQ4-query.scw
PDB file :
Tito_Scwrl_2QQ4.pdb
: