Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMITLQNVVKEYTSRNNKVLAVDHVDLEIEQGEIFGVVGYSGAGKSTLIRMFNGLELPSAGTVEVDNLLISQIRGSKLRKARQQIGMIFQHFNLLWSRTVAENIAF-PLEIAGVRGEKRRFRVNELIRLVGLEGKENAYPAELSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDEVLELLLDINKRLNLTIIVITHEMHVIRKICNRVAVMENGKVVELGDVLDVFRHPQEKVTQRFVRQVTDSDETEELIHLLLDNYAEGKIVKLLFMSENATQPVISQVAKENDVMLNVLHGNLTQTQNGAYGTLYVQVLGTEDAINASLTQLRQLKVETEVLER
4YMS Chain:J ((1-239))MIFVNDVYKNFGSLE----VLKGVTLKVNKGEVVVIIGPSGSGKSTLLRCINLLEEPTKGEVFIDGVKINNGK-VNINKVRQKVGMVFQHFNLFPHLTAIENITLAPVKVKKMNKKEAEELAVDLLAKVGLLDKKDQYPIKLSGGQKQRLAIARALAMQPEVMLFDEPTSALDPEMVKEVLNVMKQLANE-GMTMVVVTHEMGFAREVGDRVIFMDDGVIVEEGTPEEIFYRAKNERTREFLSKI------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 4YMS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157091 for 1954 contacts (-80.4/contact) +
2D Compatibility (PS) -25870 + (NN) -8901 + (LL) 8068
1D Compatibility (HY) -22800 + (ID) 4700
Total energy: -211294.0 ( -108.13 by residue)
QMean score : 0.531

(partial model without unconserved sides chains):
PDB file : Tito_4YMS.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4YMS-query.scw
PDB file : Tito_Scwrl_4YMS.pdb: