Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------LLIWSILISFAVGIIMVPIIRKFAFRINAVDTPRERHKHTKTTATLGGLAIFISFSVGM----------------------ILAPIDKSGFLPIYFGALIIIATGFIDDIFDLSPKWKMLGQILAALCVTVWGDITINFINVPFYGQVDFGYFAIPLSIIWIVAIVNALNLID--GLDGLAGGISIIALM--TIAGMALLLKDVF-------VAPVALILVAAVAAFLIYNFPPASIFMGDTGALFLGYMIAVLSLMGFKNVTFISLLVPLIILGVPLSDTFFAIVRRLKERMPISSADRSHIHHRLMALGFTEKQTVLLIYCMALLFSMTGFVFSFSTTW------------------GAMLLLLLLIFSIEIIVE-----FIGLIGEDY--RPILNLLQKIHRKRK- |
| 1OCK Chain:A ((1-412)) | MISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-AQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFASRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIP-----LALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTGDPRYNRLWTLMGNPCVNVPVLKVGGLPIGVQVIARFGNDAHALATAWFLEDALAK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1OCK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -503501 for 3104 contacts (-162.2/contact) +
2D Compatibility (PS) -35412 + (NN) -2413 + (LL) 412
1D Compatibility (HY) 13200 + (ID) 1800
Total energy: -529514.0 ( -170.59 by residue)
QMean score : 0.295
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