Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MRKVGIFPSMIILFTVGISAVLYPLLPSEVAVHFGTDFSPDMFMQKWLGLILIPFLMIMFTGTEYYGKEKVNQESLLEFEYCFRLLLVLLTIIQMSIIVYALGYDIPTGRFSLVTAGA--FMFVVAAYIQYSKKLFKFLTMIGFKKIDAWSRN-LLRKITTVTLNIAGTICFILAL-FMRNDPSYLML----AMLMTMCVIVVGSGVYLNKK
4M6G Chain:A ((8-221))
IAGMVVFIDPGHNGANDASIGRQVPTGRGGTKNCQASGTSTNSGYPEHTFTWETGLRLRAALNALGVRTALSRGNDNALGPCVDERANMANALRPNAIVSLHADGGPASGRGFHVNYSAPPLNAIQAGPSVQFARIMRDQLQASGIPKANYIGQDGLYGRSDLAGLNLAQYPSILVELGNMKNPADSALMESAEGRQKYANALVRGVAGFLATQ
General information:
TITO was launched using:
RESULT:
Template:
4M6G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -258717 for 1773 contacts (-145.9/contact) +
2D Compatibility (PS) -20853 + (NN) -3411 + (LL) 0
1D Compatibility (HY) 12000 + (ID) 1200
Total energy: -272181.0 ( -153.51 by residue)
QMean score : 0.255
(partial model without unconserved sides chains):
PDB file :
Tito_4M6G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M6G-query.scw
PDB file :
Tito_Scwrl_4M6G.pdb
: