Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTELGRKAKSFMDNGDLVPDEVTNGIVRERLSEDDAKDGFLLDGFPRTVEQAQELENILSDLGTELDAVINIDVEKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQRDDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHNINGEQEIKDVFVDVEKILASF
3DKV Chain:A ((1-215))
MNIVLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVRERLSKSDCERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEELMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLAFYDSKEVLVNVNGQQDIQDVFADVKVILGGL
General information:
TITO was launched using:
RESULT:
Template:
3DKV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68096 for 1696 contacts (-40.2/contact) +
2D Compatibility (PS) -23821 + (NN) -17329 + (LL) 0
1D Compatibility (HY) -24400 + (ID) 7350
Total energy: -140996.0 ( -83.13 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_3DKV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DKV-query.scw
PDB file :
Tito_Scwrl_3DKV.pdb
: