Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTLYIIANPHAGNKNASTIVGKIQELYHTE--DISVFYTEQKDDEKKQVINILRSFKESDHLMIIGGDGTLSKVMTYL-PQHI--PCAYYPVGSGNDFARALKIP-NLKETLTAIQTERLKEINCFIYDKGLILNSLDLGFAAYVVWKASNSKIKNILNRYRLGKITYIVIAIKSLLHSSK--VQVLVEGETGQQIKLNDLYFFALANNTYFGGGITIWPKASALTAELDMVYAKGHTFLKRLSILLSLVFKRHTTSKSIKHQTFKAMTVYFPKNSLIEIDGEIVELDQISLKCQKRYLYM |
4WRR Chain:A ((11-275)) | ----LIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFA---SKVDLIIVFGGDGTVFECTNGLAPLEIRPTLAIIPGGTCNDFSRTLGVPQNIAEAAKLITKEHVKPVDVAKANGQHFLNFWGIGLV---------SNNIDAEEKAKLGKIGYYLSTIRTVKNAETFPVKITYDG----QVYEDEAVLVMVGNGEYLGGIPSFIPNVKCDDGTLDIFVVKS-TGIQAFKDYIGKKLFEDS--NDIFHVKAKSIHIETEEEKEVDTDGESSLHTPCQIELLQGHFTM |
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General information:
TITO was launched using:
| RESULT:
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Template: 4WRR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -132624 for 1949 contacts (-68.0/contact) +
2D Compatibility (PS) -26932 + (NN) -4208 + (LL) 1780
1D Compatibility (HY) -13200 + (ID) 3150
Total energy: -178334.0 ( -91.50 by residue)
QMean score : 0.443
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