Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYQVGSLVEMKKPHACVIKETGKKANQWKVLRVGADIKIQCTNCQHVIMMSRYDFERKLKKVLQP
2YKR Chain:Q ((52-77))
-CGIGDVVEIRECRPL------SKTKSWTLVRVVEKAV---------------------------
General information:
TITO was launched using:
RESULT:
Template:
2YKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 403 for 114 contacts (3.5/contact) +
2D Compatibility (PS) -2536 + (NN) 1037 + (LL) 2928
1D Compatibility (HY) -4000 + (ID) 350
Total energy: -2518.0 ( -22.09 by residue)
QMean score : -0.039
(partial model without unconserved sides chains):
PDB file :
Tito_2YKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YKR-query.scw
PDB file :
Tito_Scwrl_2YKR.pdb
: