Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANRLKEKYTNEVVPALTEKFNYSSVMAVPKVEKIVLNMGVGDAVSNAKNLEKAAAELALISGQKPLITKAKKSIAGFRLREGVAIGAKVTLRGERMYEFLDKLVSVSLPRVRDFHGVPTKSFDGRGNYTLGVKEQLIFPEINFDDVDKVRGLDIVIVTTANTDEESRELLKGLGMPFAK
3J5S Chain:G ((2-178))
---KLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKSDEEGRALLAAFDFPFRK
General information:
TITO was launched using:
RESULT:
Template:
3J5S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60167 for 1230 contacts (-48.9/contact) +
2D Compatibility (PS) -19248 + (NN) -8787 + (LL) 272
1D Compatibility (HY) -21600 + (ID) 5500
Total energy: -115030.0 ( -93.52 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_3J5S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J5S-query.scw
PDB file :
Tito_Scwrl_3J5S.pdb
: