Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLLIMGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPRTIEQAHALDATLEELGLRLDGVINIKVDPSCLIERLSGRIINRKTGETFHKVFNPP-----VDYKEEDYYQREDDKPETVKRRLDVNIAQGEPILEHYRKLGLVTDIEGNQEITEVFADVEKALLELK
1ZIO Chain:A ((1-212))
MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDD-CQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIRELLGGLA
General information:
TITO was launched using:
RESULT:
Template:
1ZIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69969 for 1602 contacts (-43.7/contact) +
2D Compatibility (PS) -22538 + (NN) -9704 + (LL) 204
1D Compatibility (HY) -22800 + (ID) 5600
Total energy: -130407.0 ( -81.40 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_1ZIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZIO-query.scw
PDB file :
Tito_Scwrl_1ZIO.pdb
: