Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKPTRKRRVKKNIESGVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSRKSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKGPGSGRESAIRALAAAGLEVTAIRDVTPVPHNGARPPKRRRV
1HNX Chain:K ((11-126))
----------KRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRK
General information:
TITO was launched using:
RESULT:
Template:
1HNX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30132 for 873 contacts (-34.5/contact) +
2D Compatibility (PS) -13301 + (NN) -8288 + (LL) 884
1D Compatibility (HY) -7200 + (ID) 3450
Total energy: -61487.0 ( -70.43 by residue)
QMean score : 0.605
(partial model without unconserved sides chains):
PDB file :
Tito_1HNX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HNX-query.scw
PDB file :
Tito_Scwrl_1HNX.pdb
: