Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKIRLSKFIKMIVVILFLISVAASFYFFHVAQVRDDKSFISNGQRKPGNSLYAYDKSFDKLLKQKIEMTNQNIKQVAWYVPAAKKTHKTAVVVHGFANSKENMKAYGWLFHKLGYNVLMPDNIAHGESHGQLIGYGWNDRENIIKWTEMIVD-----KNPSSQITLFGVSMGGATVM---------------------------MASGEKLPSQVVNIIEDCGYSSVWDELKFQAKEMYGLPAFPLLYEVSTISKIRAGFSYGQASSVEQLKKNNLPALFIHGDKDNFVP---TSMVYDNYKATAGKKELYIVKGAKHAKSFE-TEPEKYEKRISSFLKKYEK |
| 4KEA Chain:A ((44-267)) | -------------------------------------------------------------------------------------------LLVHGFTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDM------ERTTFHDWVASVEEGYGWLKQRCQTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIAAGMTGGGELPRYLDSIGSDLKNPDV-KELAYEKT-----PTASLLQLARLMAQTKA-----------KLDRIVCPALIFVSDENHVVPPGNADIIFQGISST--EKEIVRLRNSYHVATLDYDQPMIIERSLEFFAKHA-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4KEA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -25397 for 1400 contacts (-18.1/contact) +
2D Compatibility (PS) -19870 + (NN) -3547 + (LL) 9032
1D Compatibility (HY) -12400 + (ID) 2450
Total energy: -54632.0 ( -39.02 by residue)
QMean score : 0.362
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