Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKFEHVSKVYGEKEALSDLTLSIKDGEIFGLIGHNGAGKTTTISILTSIIDATYGQVYIDDLLLTEHRDQI-----KKKIGYVPDSPDIFLNLTAEEYWYFLAKIYDVAPEDIEARITKLVDIFELEEQRYNPIESFSHGMRQKVIVIGALLPNPDIWILDEPLTGLDPQASFDLK-EMMKEHAKNGKTVIFSTHVLAVAEQLCDRIGILKQGKLIFVGSLGELKMQYPDKDLETIYLELAGRQANREG
2D62 Chain:A ((7-230))
-VKLINIWKRFGDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAMVFQSYALYPHMTVYDNIAFPLKLRKVPKQEIDKRVREVAEMLGLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLMDEPLSNLDAKLRVKMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNKGELQQVGTPDEVYYKPVNTFVAGFIGSPPMNFLDATI
General information:
TITO was launched using:
RESULT:
Template:
2D62.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163507 for 1747 contacts (-93.6/contact) +
2D Compatibility (PS) -23618 + (NN) -8123 + (LL) 208
1D Compatibility (HY) -14800 + (ID) 3300
Total energy: -213140.0 ( -122.00 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_2D62.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D62-query.scw
PDB file :
Tito_Scwrl_2D62.pdb
: