Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSNQHIEELNDQQIVRREKMAALTEQGIDPFGKRFERTATSGQLNEKYADKSKEDLHDIEETATIAGRLMTKRGKGK-VGFAHIQDREGQIQIYVRKDSVGEENYEIF----KKADLGDFLGVEGQVMRTDMGELSIKATHITHLSKALRPLPEKFHGLTDIETIYRKRHLDLISNRDSFDRFVTRSKIISEIRRFMDSNGFLEVETPVLHNEAGGASARPFITHHNAQDIDMVLRIATELHLKRLIVGGMERVYEIGRIFRNEGMDATHNPEFTSIEAYQAYADYQDIMDLTEGIIQHVTKTVKGDGP-----INYQGTEIKINEPFKRVHMVDAVKEITGIDFWKEMTLEEAQALAQEKNVPLE-----KHFTTVGHIINAFFEEFVEDTLIQP---TFVFGHPVEVSPLAKKNDTDPR-----FTDRFELFIMTKEYANAFTELNDPIDQLSRFEAQ----------------------------------ASAKELGDDEATGVDYDYVEALEYGMPPTGGLGIGIDRLCMLLTDTTTIRDVLLFPTMK |
| 4UP7 Chain:A ((28-568)) | --------------------------GHNPWPHKFNVSITVPEFIAKYSGLEKSQVSD--DIVSVAGRVLSKRSSSSALMFIDLHDSQTKLQIMLNKSAY--ENKEDFVSLTKMIYRGDICGFTGHPTRTKTGELSLIPISGMILSPCLHMLPSMHYGLGDQETRFRKRYLDLIVNPESVKNFVLRTKVVKAVRKYLDDKGFLEVETPILNTIPGGATARPFITHHNQLDIQMYMRIAPELYLKELVVGGINRVYEIGRLFRNEGIDQTHNPEFTTCEFYMAYADYNDIMKMTEELLGNMVKDITGGSTKLEIK------------------------------------------FVTEKKMVLDFTAPFKRISYV-HALEEKFGEKIPRPLDGPEALTFLKKQAIRFNAICAEPQTTARVMDKLFGDLIEVDLVQPTFVCDQPQLMSPLAKYHRSEPELTERFELFILKREIANAYTELNNPIVQRSNFEQQAKDKAAGDDEAQLVDEVFLDAIEHAFPPTGGWGLGIDRLAMLLADVDNIKEVILFPTMR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4UP7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -91413 for 2903 contacts (-31.5/contact) +
2D Compatibility (PS) -43646 + (NN) -2515 + (LL) 6472
1D Compatibility (HY) -36800 + (ID) 9050
Total energy: -176952.0 ( -60.95 by residue)
QMean score : 0.323
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