Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATITVFSKNNCMQCKMTKKFLDQHGADFEEINIDEKPEKIEYV-KNLGFSAAPVIEAGNVVFSGFQPSKLKELV
4TR1 Chain:A ((1-56))
MKNITIYTKNYCPYSKKAVSLLSSKGVDFKEVDVTHDSKAFEDVMAKTGWDTVPQVFVDEEFLGGCDDIHALDRQ
General information:
TITO was launched using:
RESULT:
Template:
4TR1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24186 for 313 contacts (-77.3/contact) +
2D Compatibility (PS) -5844 + (NN) -2484 + (LL) 0
1D Compatibility (HY) -3200 + (ID) 800
Total energy: -36514.0 ( -116.66 by residue)
QMean score : 0.841
(partial model without unconserved sides chains):
PDB file :
Tito_4TR1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TR1-query.scw
PDB file :
Tito_Scwrl_4TR1.pdb
: