Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNQEKMEKAIYQFLEALGENPDREGLKDTPKRVA-------KMYIEMFSGLNQDPKEQFTAVFSENHEEVVIVKDIPFYSMCEHHLVPFYGKAHIAYLPNDGRVTGLSKLARAFEVASKRPQLQERLTAQVAQALEDALAPKGIFVMIEAEHMCMTMRGIKKPGSKTITTVARGLYKDDRYERQEILSLIQKG
1FB1 Chain:E ((13-195))
--NLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLND------AIFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNK-QVLGLSKLARIVEIYSRRLQVQERLTKQIAVAITEALRPAGVGVVVEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKTREEFLTLIRS-
General information:
TITO was launched using:
RESULT:
Template:
1FB1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70324 for 1283 contacts (-54.8/contact) +
2D Compatibility (PS) -19676 + (NN) -9296 + (LL) 292
1D Compatibility (HY) -18000 + (ID) 4750
Total energy: -121754.0 ( -94.90 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_1FB1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FB1-query.scw
PDB file :
Tito_Scwrl_1FB1.pdb
: