Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLLEKINETRDFLQAKGVTAPEFGLILGSGLGELAEEIENPIVVDYADIPNWGQSTVVGHAGKLVYGDLSGRKVLALQGRFHFYEGNTMEIVTFPVRIMRALACHSVLVTNAAGGI--GYGPGTLMLIKDHINV---IGTNPLIGENLEEFGPRFPDMSDAYTATYRQKAHQIAEK--QNIKLEEGVYLGVSGPTYETPAEIRAFQTMGAQAVGMSTVPEVIVAAHSGLKVLGISAITN---FAAGFQSELNHEEVVEVTQRIKEDFKGLVKSLVAEL
1VFN Chain:A ((5-279))
----EDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPE-------GRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGQNPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMD--SQGKANHEEVLEAGKQAAQKLEQFVSLLMASI
General information:
TITO was launched using:
RESULT:
Template:
1VFN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148843 for 2083 contacts (-71.5/contact) +
2D Compatibility (PS) -27102 + (NN) -5215 + (LL) 1008
1D Compatibility (HY) -25200 + (ID) 6050
Total energy: -211402.0 ( -101.49 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_1VFN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VFN-query.scw
PDB file :
Tito_Scwrl_1VFN.pdb
: