Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPL-VAENQVTIKEERVLEWLSKGAQPSDTVRNLLSKAGVMTKFHDQKFSK
1N33 Chain:P ((2-80))
--VKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVFRQE-------
General information:
TITO was launched using:
RESULT:
Template:
1N33.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37451 for 550 contacts (-68.1/contact) +
2D Compatibility (PS) -8192 + (NN) -3159 + (LL) 752
1D Compatibility (HY) -5200 + (ID) 2050
Total energy: -55300.0 ( -100.55 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_1N33.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N33-query.scw
PDB file :
Tito_Scwrl_1N33.pdb
: