Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIIIQRVNQASVSIEDDVVGSIEK----------GLVLLVGIAPEDTTEDIAYAVRKITSMRIFSDDEGKMNLSIQDIKGSVLSISQFTLFADTKKGNRPAFTGAADPVKANQFYDIFNQELA---NHVSVETGQFGADMQVSLINDGPVTIVLDTKNK
4NBI Chain:A ((1-157))
MRVVIQRVKGAILSVRKENIGENEKELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHDI
General information:
TITO was launched using:
RESULT:
Template:
4NBI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81357 for 980 contacts (-83.0/contact) +
2D Compatibility (PS) -15668 + (NN) -6954 + (LL) 0
1D Compatibility (HY) -14000 + (ID) 2900
Total energy: -120879.0 ( -123.35 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_4NBI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NBI-query.scw
PDB file :
Tito_Scwrl_4NBI.pdb
: