Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDETVKLNHTCVICDQEKNRGIHLYTKFICLDCERKVISTSTS----DPDYAFYVKKLKSIHTPPLYS
2APO Chain:B ((3-54))
----EMRMKKCPKCGLYT------L-KEICPKCGEKTVIPKPPKFSLEDRWGKYRRMLKRALK-----
General information:
TITO was launched using:
RESULT:
Template:
2APO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4277 for 225 contacts (-19.0/contact) +
2D Compatibility (PS) -4773 + (NN) -631 + (LL) 572
1D Compatibility (HY) 0 + (ID) 500
Total energy: -9609.0 ( -42.71 by residue)
QMean score : 0.376
(partial model without unconserved sides chains):
PDB file :
Tito_2APO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2APO-query.scw
PDB file :
Tito_Scwrl_2APO.pdb
: