Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEGAEQIISEIQNQLQNLK
3HA4 Chain:A ((70-139))
------------------LIPLELTQVLKYSSGKYLQTYVADPDEMRKEVLMQLLNVKYGRVSDPN----GGRV---NKDVEEIISMAVDDLENM-
General information:
TITO was launched using:
RESULT:
Template:
3HA4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11195 for 434 contacts (-25.8/contact) +
2D Compatibility (PS) -7632 + (NN) -1535 + (LL) 2504
1D Compatibility (HY) -4800 + (ID) 1150
Total energy: -23808.0 ( -54.86 by residue)
QMean score : 0.419
(partial model without unconserved sides chains):
PDB file :
Tito_3HA4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HA4-query.scw
PDB file :
Tito_Scwrl_3HA4.pdb
: