Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLLVIDVGNTNTVLGVYHDGKLEYHWRIETSRHKTEDEFGMILRSLFDHSGLMFEQIDGIIISSVVPPIMFALERMCTKYFHIEPQIVGPGMKTGLNIKYDNPKEVGADRIVNAVAAIHLYGNP-LIVVDFGTATTYCYIDENKQYMGGAIAPGITISTEALYSRAAKLPRIEITRPDNIIGKNTVSAMQSGILFGYVGQVEGIVKRMKWQAKQEPK--VIATGGLAPLIANESDCIDIVDPFLTLKGLELIYERNRVGSV
3DJC Chain:C ((3-251))
LILCIDVGNSHIYGGVFDGDEIKLRFR-HTSKVSTSDELGIFLKSVLRENNCSPETIRKIAICSVVPQVDYSLRSACVKYFSIDPFLLQAGVKTGLNIKYRNPVEVGADRIANAIAATHSFPNQNIIVIDFGTATTFCAISHKKAYLGGAILPGLRLSADALSKNTAKLPSVEIIKTESVVGRSTIESIQSGVYYGVLGACKELIQRIHHEAFNGDQILILATGGFASLF-DKQGLYDHLVPDLVLQGIRL----------
General information:
TITO was launched using:
RESULT:
Template:
3DJC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -195226 for 1914 contacts (-102.0/contact) +
2D Compatibility (PS) -26309 + (NN) -15908 + (LL) 1052
1D Compatibility (HY) -27600 + (ID) 5250
Total energy: -269241.0 ( -140.67 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_3DJC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DJC-query.scw
PDB file :
Tito_Scwrl_3DJC.pdb
: