Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIMKFFKDVGKEMKKVSWPKGKELTRYTITVISTVIFFVIFFALLDTGISQLIRLIVE
2WW9 Chain:B ((24-71))
-APVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLI----------
General information:
TITO was launched using:
RESULT:
Template:
2WW9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6636 for 183 contacts (-36.3/contact) +
2D Compatibility (PS) -5013 + (NN) -1770 + (LL) 1660
1D Compatibility (HY) -2000 + (ID) 450
Total energy: -14209.0 ( -77.64 by residue)
QMean score : 0.387
(partial model without unconserved sides chains):
PDB file :
Tito_2WW9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WW9-query.scw
PDB file :
Tito_Scwrl_2WW9.pdb
: