Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKGKKYVEAAKLVDRSKAYDVSEAVALVKKTNTAKFDATVEVAFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADFVGDTDYINKIQQGWFDFDVIVATPDMMGEVGKIGRVLGPKGLMPNPKTGTVTFEVEKAIGEIKAGKVEYRVDKAGNIHVPIGKVSFEDEKLVENFTTMYDTILKAKPAAAKGVYVKNVAVTSTMGPGVKVDSSTFNVK
3J5S Chain:F ((1-230))
MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVDQAGLS--
General information:
TITO was launched using:
RESULT:
Template:
3J5S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79640 for 1752 contacts (-45.5/contact) +
2D Compatibility (PS) -24633 + (NN) -12010 + (LL) 256
1D Compatibility (HY) -18400 + (ID) 5900
Total energy: -140327.0 ( -80.10 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_3J5S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J5S-query.scw
PDB file :
Tito_Scwrl_3J5S.pdb
: