Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGQKVNPVGLRIGVIRDWESKWYAGK-DYADFLHEDLKIREYISKRLSDASVSKVEIERAANRVNITIHTAKPGMVIGKGGSEVEALRKALNSLTGKRVHINILEIKRADLDAQLVADNIARQLENRVSFRRAQKQQIQRTMRAGAQGVKTMVSGRLGGADIARSEYYSEGTVPLHTLRADIDYATSEADTTYGKLGVKVWIYRGEVLPTKKKNEEGGK
1N33 Chain:C ((2-207))
-GNKIHPIGFRLGITRDWESRWYAGKKQYRHLLLEDQRIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTGKNVALNVQEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAEQARTEWAAQGRVPLHTLRANIDYGFALARTTYGVLGVKAYIFLGEV------------
General information:
TITO was launched using:
RESULT:
Template:
1N33.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47913 for 1535 contacts (-31.2/contact) +
2D Compatibility (PS) -21592 + (NN) -4187 + (LL) 336
1D Compatibility (HY) -20000 + (ID) 5450
Total energy: -98806.0 ( -64.37 by residue)
QMean score : 0.351
(partial model without unconserved sides chains):
PDB file :
Tito_1N33.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N33-query.scw
PDB file :
Tito_Scwrl_1N33.pdb
: