Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MITKTSKNAARLKRHARVRAKLSGTAERPRLNVFRSNKHIYAQIIDDVNGVTLASASTLDKDL--NVESTGDTSAATKVGELVAKRAAEKGISDVVFDRGGYLYHGRVKALADAAREAGLKF
5GAG Chain:P ((25-117))
-----------------------------RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF
General information:
TITO was launched using:
RESULT:
Template:
5GAG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35322 for 680 contacts (-51.9/contact) +
2D Compatibility (PS) -10164 + (NN) -4736 + (LL) 2288
1D Compatibility (HY) -6000 + (ID) 2600
Total energy: -56534.0 ( -83.14 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_5GAG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5GAG-query.scw
PDB file :
Tito_Scwrl_5GAG.pdb
: