Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRTTPMANASTIERKWLVVDAAGKTLGRLSSEVAAILRGKHKPTYTPHVDTGDHVIIINAEKIELTGKKLTDKIYYRHTQHPGGLKSRTALEMRTNYPEKMLELAIKGMLPKGSLGRQMFKKLNVYRGSEHPHEAQKPEVYELRG
5GAE Chain:K ((3-142))
---TFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI--
General information:
TITO was launched using:
RESULT:
Template:
5GAE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52126 for 957 contacts (-54.5/contact) +
2D Compatibility (PS) -15425 + (NN) -9962 + (LL) 288
1D Compatibility (HY) -12800 + (ID) 4100
Total energy: -94125.0 ( -98.35 by residue)
QMean score : 0.612
(partial model without unconserved sides chains):
PDB file :
Tito_5GAE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5GAE-query.scw
PDB file :
Tito_Scwrl_5GAE.pdb
: