Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKAKTLLMSCFLLLSVTACAPKDQAADMDYDQTKKMVVDILKTDDGKKAIKELLNDDAMNEALVIDQDAIKGTIEKTLTSKKGEEFWKNIFEDTDFAEGFAKTLQTEHEKVIKKLMKDPDYQKMLMSVMQDPGMDKKYSQLAKSQEFRSYLEEVINETLSSPLYKKQFEDELKKAAKDTAKESE
2LLV Chain:A ((140-191))
-------------------------------------------------------------------------------------NLIENLKKNPKTSE----------------MMKDPQLVAKLIGYKQNPQAI--GQDLFTDPRLMTIMATL------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2LLV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15438 for 312 contacts (-49.5/contact) +
2D Compatibility (PS) -5614 + (NN) -4846 + (LL) 10024
1D Compatibility (HY) -3200 + (ID) 500
Total energy: -19574.0 ( -62.74 by residue)
QMean score : 0.330
(partial model without unconserved sides chains):
PDB file :
Tito_2LLV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LLV-query.scw
PDB file :
Tito_Scwrl_2LLV.pdb
: