Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKGSLSEHKAGNRRFTLYLPPSYSTDSGGFPAVYVQDG-----SSLFQNQIEL---LESAFQQQRLPELVLIGIEPENRLDEYTPWPAASLSDRFTDFGGMGYHYLSDITNQFIPLIEENWNVTREPQSRGMIGAS----------LGGLISMFAILKYPSMFGKIGSISGSYWYENA--------AETIHISSLKPGTARVFMSIGSEEGREKQSIQRHMLKKTKQVHQSLKEKGFTEDQLCLSIEKGAVHHHKYFCKQFINALEWLYGKNRSTL |
| 1GKK Chain:A ((51-287)) | ----------GTKSLNVYLPYGYDPNKK-YNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVV-----------TP--------TFNGGNCTAQNFYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFSMGGLTTWYVMVNCLDYVAYFMPLSGDYWYGNSPQDKANSIAEAINRSGLSKREYFVFAATGSEDIAYANM--NPQIEAMKALPHFDYTSDFSKGNFYFLVAPGATHWWGYVRHYIYDALPYFF------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GKK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -108942 for 1610 contacts (-67.7/contact) +
2D Compatibility (PS) -22390 + (NN) -8010 + (LL) 1604
1D Compatibility (HY) -20000 + (ID) 2550
Total energy: -160288.0 ( -99.56 by residue)
QMean score : 0.429
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