Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------MYSKQWTRIILITSPFAIALSLLLSILYGAKHLSTDIVFTSLIHF-DPGNTDHQIIWHSRIPRAAGALLIGAALAVSGALMQGITRNYLASPSIMGVSDGSAFIITLCMVLLPQSSSIEMMIYSFIGSALGAVLVFGLAAMMP------NGFTP------------VQLAIIGTV--TSMLLSSLSAAMSIYFQISQDLSFWYSARLHQMSPDFLKLAAPFFLIGIIMAISLSKK--------------VTAVSLGDDISKSLGQKKKTIKIMAMLSVIILTGSAVALAGKIAFVGL------------------VVPHITRFLVGSDYSRLIPCSCILGGIFLTLCDLASRFINYPFETPIE------VVTSIIGVPFFLYLIKRKGGEQNG |
| 4WGV Chain:A ((45-439)) | VGYMDPGNWITSMQGGAQYGYTLLFVILISSLAAMLLQSMTVRLGIAT--GKDLAQMTRHFLSKPVAIIFWIIAELAIIATDIAEVIGSAIAL--DLIFGI-------PLIVGALITVFDVFLLLFIMRFGFRKIEAIVGTLIFTVL-AIFVFEVFISSPQLTDILNGFVPHKEIVTNQGILYIALGIIGATIMPHNLYLHSSIVQSRKYDRHDNEEKAQAIKYATIDSN-LQLSIAFVVNCLLLTLGAALFFGTKTNDLGGFYDLYHALKTEPVLGATLGGVMSTLFAVALLASGQNSTITGTLAGQIVMEGFLRLSIPNWLRRLITRSLAVIPVIICLIIFKGNSEKIEQLLVFSQVFLSIA-LPFSLIPLQLATSNKKLMGPFINKTWVNIISWTLIVILSGLNVY- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4WGV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -254468 for 2399 contacts (-106.1/contact) +
2D Compatibility (PS) -32397 + (NN) -2646 + (LL) 188
1D Compatibility (HY) -20800 + (ID) 3500
Total energy: -313623.0 ( -130.73 by residue)
QMean score : 0.198
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