Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRFLKALPRRAEVQYDCLDRTLETQENVNLNIRVNVKEVATWGV--NTCIISLKGLD----NADDRFVLPE-----VNTALA----LFPLSIAADCLLMLPCISVVMSISSVMKSVTVE
3ODP Chain:A ((302-364))
-----------------------------------LKEVYSQNGNHKVLAISEYEDKLIEDNSDYFIAINKEEQEYEDDSFLSLDYLLNAQMYAFINS---------------------
General information:
TITO was launched using:
RESULT:
Template:
3ODP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13978 for 202 contacts (-69.2/contact) +
2D Compatibility (PS) -4881 + (NN) 1941 + (LL) 5208
1D Compatibility (HY) -400 + (ID) 450
Total energy: -12560.0 ( -62.18 by residue)
QMean score : 0.177
(partial model without unconserved sides chains):
PDB file :
Tito_3ODP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ODP-query.scw
PDB file :
Tito_Scwrl_3ODP.pdb
: