Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMEIERINEHTVKFYMSYGDIEDRGFDREEIWYNRERSEELFWEVMDEVHEEEEFAVEGPLWIQVQALDKGLEIIVTKAQLSKDGQKLELPIPEDKKQEPASEDLDALLDDFQKEEQAVNQEEKEQKLQFVLRFGDFEDVISLSKLNVNGSKTTLYSFENRYYLYVDFCNMTDEEVENQLSILLEYATESSISIHRLEEYGKLIISEHALETIKKHFAS
2Y1R Chain:P ((5-98))----------------------------------------------------------------------------------------------------------------------------QKLQFVLRFGDFEDVISLSKLNVNGSKTTLYSFENRYYLYVDFCNMTDEEVENQLSILLEYATESSISIHRLEEYGKLIISEHALETIKKHFAS


General information:
TITO was launched using:
RESULT:

Template: 2Y1R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain P - contact count / total energy / energy per contact / energy per residue : 439 -67326 -153.36 -716.23
target 2D structure prediction score : 0.69
Monomeric hydrophicity matching model chain P : 0.77

3D Compatibility (PKB) : -153.36
2D Compatibility (Sec. Struct. Predict.) : 0.69
1D Compatibility (Hydrophobicity) : 0.77
QMean score : 0.834

(partial model without unconserved sides chains):
PDB file : Tito_2Y1R.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2Y1R-query.scw
PDB file : Tito_Scwrl_2Y1R.pdb: