Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MLPKYAQVKEEISSWINQGKILPDQKIPTENELMQQFGVSRHTIRKAIGDLVSQGLLYSVQGGGTFVASRSAKSALHSNKTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIV------EPTKSALQTPNIGYYLNLEKNGIPFAMINASYAELAAPSFTLDDV-KGGMMAAEHLLSLGHTHMMGIFKA--DDTQGVKRMNGFIQAHRERELFPSPDMIVTFTTEEKES--KLLEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLKVPEDMSIVGYDDSHFAQISEVKLTSVKHPKSVLGKAAAKYVIDCLEHKKPKQEDVIFEPELIIRQSARKLNE 2PUF Chain:A ((50-329)) --------------------------------------------------------------------ARSLK--VNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLE----------EYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREI-GVIPGPLEQNTGAGRLAGFMKAMEE-AMIKVPESWIVQGDFEPESGYRAMQQILS-----QPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRS------

General information: TITO was launched using: RESULT: Template: 2PUF.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1485 -7614 -5.13 -28.30 target 2D structure prediction score : 0.63 Monomeric hydrophicity matching model chain A : 0.72 3D Compatibility (PKB) : -5.13 2D Compatibility (Sec. Struct. Predict.) : 0.63 1D Compatibility (Hydrophobicity) : 0.72 QMean score : 0.488

(partial model without unconserved sides chains): PDB file : Tito_2PUF.pdb: (Unconserved sides chains are recalculated) : Sequence: align-2PUF-query.scw PDB file : Tito_Scwrl_2PUF.pdb: