Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAHPCATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEHRVEYGVWAGIKLPGGQYRKREQLAAAHDVLRRIAGGEINSRQLPDNAALLAR---NEGLEVTPVPGVVVH------LPIAQVGPQPAA
1AOP Chain:? ((8-101))
---------------------------------------------------------------------------------------LLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILPVHQMLHSVGLDAL-
General information:
TITO was launched using:
RESULT:
Template:
1AOP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9151 for 291 contacts (-31.4/contact) +
2D Compatibility (PS) -5983 + (NN) -4863 + (LL) 5936
1D Compatibility (HY) -2400 + (ID) 450
Total energy: -16911.0 ( -58.11 by residue)
QMean score : 0.367
(partial model without unconserved sides chains):
PDB file :
Tito_1AOP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AOP-query.scw
PDB file :
Tito_Scwrl_1AOP.pdb
: