Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPRVEVGLVIHSRMHARAPVDVWRSVRSLPDFWRLLQVRVASQFGDGLFQAGLAGALLFNPDRAADPMAIAGAFAVLFLPYSLLG-PFAGALMD-RWDRRWVLVGANTGRLALIAGVGTILAVGAGDVPLLVGALVANGLARFVASGLSAALPHVVPREQVVTMNSVAIASGAVSAFLGANFMLLPRWLLGSGDEGASAIVFLVAIPVSIALLWSLRFGPRVLGPDDTERAIHGSAVYAVVTGWLHGARTVVQLPTVAAGLSGLAAHRMVVGINSLLILLLVRHVTARAVGGLGTALLFFAATGLGAFLANVLTPTAIRRWGRYATANGALAAAATIQVAAAGLLVPVMVVCGFLLGVAGQVVKLCADSAMQMDVDDALRGHVFAVQDALFWVSYILSITVAAALIPEHGHAPVFVLFGSAIYLAGLVVHTIVGRRGQPVIGR |
2VIU Chain:A ((9-328)) | --------STATLCLGHHAVPNGTLVKTITD--DQIEVTNATE----LVQSSSTGKICNNPHRILD-----GIDCT--LIDALLGDPHCDVFQNETWD---LFVERSKAF-------SNCYPYDVPDYASLRSLVASSGTLEFITEGFT--WTGVIQNG-----GSNACKRGPGSGFFSR-----LNWLTKSGS---TYPVLNVTMPNNDNFDKLYIWGIHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIGSRPWVRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRG---YFKMRTGKSSIMRS--DAPIDTCISECITPNGSIPNDKPFQ-----------------------------------NVNK-----------------------------ITYGACPKYVKQNT--------LKLATGMRNVPEKQT |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VIU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -186601 for 2400 contacts (-77.8/contact) +
2D Compatibility (PS) -33758 + (NN) -2181 + (LL) 13176
1D Compatibility (HY) -5200 + (ID) 3100
Total energy: -217664.0 ( -90.69 by residue)
QMean score : 0.170
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