Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDQPWNANIHYDALLDAMVPLGTQCVLDVGCGDGLLAARLARRI-PYVTAVDIDAPVLRRAQTRFA-NAPIRWLHADIMTAELPNAGFDAVVSNAALHH--IEDTRTALSRLGGLVTPGGTLAVVTFVTPSLRNGLWHLTSWVACGMANRVKGKWEHSAPIKWPPPQTLHELRSHVRALLPGACIRRLLYGRVLVTWRAPV
4R6W Chain:A ((51-159))
-------------------------VLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRAAILHLSLENKNKLFQKCYKWLKPTGTLLITDYCATEKEN-------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4R6W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78109 for 733 contacts (-106.6/contact) +
2D Compatibility (PS) -11688 + (NN) -5526 + (LL) 6460
1D Compatibility (HY) -8000 + (ID) 1450
Total energy: -98313.0 ( -134.12 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_4R6W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4R6W-query.scw
PDB file :
Tito_Scwrl_4R6W.pdb
: