Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHESRLASARLYLCTDARR--ERGDLAQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGALFAVNDRADIARAAGADVLHLGQRDLPVNVARQILAPDTLIGRSTHDP---DQVAAAAAGDADYFCVGPCWPTPTK--PGRAAPGL-GLVRVAAELGGDDKPW---FAIGGINAQRLPAVL----DAGARR----IVVVRAITSADDPRAAAEQLRSALTAAN
3NM1 Chain:A ((12-254))
----------LYLVTDSGMIPEGKTLYGQVEAGLQNGVTLVQIREKDA--DTKFFIEEALQIKELC-------HAHNVPLIINDRIDVAMAIGADGIHVGQDDMPIPMIRKLVG--MVIGWSVGFPEEVDELSKMGP--VDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGLHPDNIERVLYQCVSSNGKRSLDGICVVSDIIASLDAAKSTKILR-------
General information:
TITO was launched using:
RESULT:
Template:
3NM1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94900 for 1438 contacts (-66.0/contact) +
2D Compatibility (PS) -21761 + (NN) -21184 + (LL) 1580
1D Compatibility (HY) -14400 + (ID) 3400
Total energy: -154065.0 ( -107.14 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_3NM1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NM1-query.scw
PDB file :
Tito_Scwrl_3NM1.pdb
: