Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVVINP-VLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH
1ICJ Chain:A ((1-146))
-SVLQVLHIPDERLRKVAKPVE-----EVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENRD----ERLVLINPELLEKS--GET-----GIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYL-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1ICJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67867 for 1128 contacts (-60.2/contact) +
2D Compatibility (PS) -15636 + (NN) -2957 + (LL) 1676
1D Compatibility (HY) -14800 + (ID) 2800
Total energy: -102384.0 ( -90.77 by residue)
QMean score : 0.474
(partial model without unconserved sides chains):
PDB file :
Tito_1ICJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ICJ-query.scw
PDB file :
Tito_Scwrl_1ICJ.pdb
: